A dumps of tables from the MGC track database are deposted every Wednesday
at 2 am EST at ftp-private.ncbi.nih.gov
. The data is then
processed by mgcImport
to create tab files used to load the
mgcStatus
table. A script mgcDownload
is
run by cron to download and process the data.
$gbRoot/data/mgc/$date/
- Directory containing MGC
data for download done on $date
:
library.gz
- MGC library table dump.
clone.gz
- MGC clone table dump.
fullength.gz
- MGC fullength table dump.
stage1.gz
- MGC stage1 table dump.
table.descriptions
- schema for mgc tables.
$gbRoot/processed/mgc/$date/
- Directory containing MGC
data generated from corresponding download directory.
mgcStatus.tab,gz
- Tab file containing summerized
status information for all MGC clones, created locally by
mgcImport
.
mgcFullStatus.tab.gz
- Subset of mgcStatus.tab,gz
for the MGC full-CDS clones. This is used to load browsers that
will only have the full-CDS track. It is signficantly smaller than
the full table.
mgcFullStatus
- Table containing status information about
full-CDS MGC clones.
mgcStatus
- Table containing status information about
all MGC clones.
mgcFullMrna
- PSL table of MGC full-length mRNAs.
mgcGenes
- MGC full-length mRNAs with CDS annotation.
mgcIncompleteMrna
- PSL table of MGC mRNAs which are
not full length or contain other errors.
mgcPickedEst
- MGC ESTs that have been picked for sequences
or are in the sequencing pipeline.
mgcFailedEst
- MGC ESTs where sequencing failed.
mgcUnpickedEst
- ESTs from MGC libraries that have not
yet been picked for sequencing.