Here is a list of all variables with links to the classes they belong to:

- f -

failed_filter : vg::Funnel::Item
failed_statistic : vg::Funnel::Item
failing : vg::Funnel::FilterPerformance
failing_correct : vg::Funnel::FilterPerformance
fallbacks : vg::MinimizerMapper::aligner_stats_t
fanout_length_threshold : vg::BaseMapper
fast_reseed : vg::BaseMapper
fast_reseed_length_diff : vg::BaseMapper
fasta_to_vcf_renames : vg::NameMapper
feature_name : vg::FeatureSet::Feature
feature_type : vg::Transcriptome
features : vg::FeatureSet, vg::SmallSnarlSimplifier
file : vg::VcfBuffer
file_name : vg::algorithms::GFAFormatError
filename : job_type, vg::GBWTHandler
filenames : vg::IndexFile, vg::temp_file::Handler, vg::VGset
FILES_PER_MERGE : vg::GAFSorterParameters
files_per_merge : vg::GAFSorterParameters
filter_on_all : vg::ReadFilter< Read >
filter_short_mems : vg::BaseMapper
find_supplementaries : vg::MinimizerMapper
finished_decoding : vg::ZipCode
first : vg::FeatureSet::Feature
fixed_fragment_model : vg::FragmentLengthStatistics
flank_offset : vg::ZipCodeForest::seed_info_t
flank_range : vg::VariantAdder
flat : vg::Constructor
flat_node : haplo::haplo_DP_rectangle
force_haplotype_count : vg::MultipathMapper
force_phasing : vg::HaplotypeIndexer
forks : vg::algorithms::kmer_t, vg::algorithms::walk_t
format : vg::HTSWriter, vg::MultipathAlignmentEmitter
forward_graph : vg::ReverseGraph
forward_multiplier : vg::GreedyMinDistanceClusterer
forward_only : vg::Sampler
frac_score : vg::ReadFilter< Read >
frag_stats : vg::Mapper
fragment : vg::MaximalExactMatch, vg::MinimizerMapper::alignment_index_t, vg::MinimizerMapper::read_alignment_index_t, vg::RecombinatorHaplotype, vg::SnarlDistanceIndexClusterer::Cluster
fragment_best_left : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
fragment_best_right : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
fragment_directions : vg::FragmentLengthStatistics
fragment_distance_limit : vg::SnarlDistanceIndexClusterer::ClusteringProblem
fragment_length_cache_size : vg::FragmentLengthStatistics
fragment_length_distr : vg::MinimizerMapper, vg::PairedEndMapper
fragment_length_warning_factor : vg::MultipathMapper
fragment_lengths : vg::FragmentLengthStatistics
fragment_map : vg::HaplotypePartitioner, vg::Recombinator
fragment_max : vg::FragmentLengthStatistics
fragment_mean : vg::NGSSimulator
fragment_model_update_interval : vg::FragmentLengthStatistics
fragment_orientations : vg::FragmentLengthStatistics
fragment_sd : vg::NGSSimulator
fragment_sigma : vg::FragmentLengthStatistics
fragment_size : vg::FragmentLengthStatistics
fragment_union_find : vg::SnarlDistanceIndexClusterer::ClusteringProblem
fragments : vg::GrefCover::TopLevelSnarlStats, vg::Recombinator::Statistics
fragments_in_one_snarl : vg::GrefCover::TopLevelSnarlStats
fragments_on_one_spine_node : vg::GrefCover::TopLevelSnarlStats
fragments_spanning_snarls : vg::GrefCover::TopLevelSnarlStats
fragments_spanning_units : vg::GrefCover::TopLevelSnarlStats
fragments_touching_spine : vg::GrefCover::TopLevelSnarlStats
fragments_with_unmapped_nodes : vg::GrefCover::TopLevelSnarlStats
frequency : vg::MCMCGenotyper
from : vg::RecombinatorFragment, vg::WFATree
from_anchor : vg::algorithms::transition_info
from_node_id : vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
frontier : vg::IncrementalSubgraph
frontier_copy_limit : vg::IncrementalSubgraph
frontier_count : vg::IncrementalSubgraph
frontier_index : vg::IncrementalSubgraph
full_haplotypes : vg::Recombinator::Statistics
full_length_bonus : ScoringOptions, vg::EditAlignmentScorer
funnel_name : vg::Funnel