Here is a list of all variables with links to the classes they belong to:

- h -

half_coverage_chains : vg::Recombinator::Parameters
half_coverage_contigs : HaplotypesConfig
half_coverage_num_haplotypes : vg::Recombinator::Parameters
handle_base_option : vg::ConfigurableParser
handle_graph : vg::MinDistanceClusterer, vg::TargetValueSearch
handle_idxs : vg::JoinedSpliceGraph
handle_val_range : vg::DagifiedGraph, vg::DozeuPinningOverlay
haplo_node : vg::PhasedGenome::iterator
haplo_score_provider : vg::BaseMapper
haploid_prior_logprob : vg::Genotyper
haploid_scoring : vg::Recombinator::Parameters
haplotype_consistency_exponent : vg::BaseMapper
haplotype_gbwt_ids : vg::TranscriptPath
haplotype_id : vg::RecombinatorFragment
haplotype_indexer : GBWTConfig
haplotype_input : HaplotypesConfig
haplotype_number : vg::PhasedGenome::iterator
haplotype_output : HaplotypesConfig
haplotype_positions : vg::MinimizerMapper
haplotype_sampling_diploid : vg::IndexingParameters
haplotype_sampling_minimizer_k : vg::IndexingParameters
haplotype_sampling_minimizer_w : vg::IndexingParameters
haplotype_sampling_num_haplotypes : vg::IndexingParameters
haplotype_sampling_reference_samples : vg::IndexingParameters
haplotypes : GBWTConfig, vg::PhasedGenome, vg::Recombinator, vg::Recombinator::Statistics
hard_hit_cap : vg::MinimizerMapper
hard_hit_max : vg::BaseMapper
has_buffer : vg::VcfBuffer
has_chain_values : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem::SnarlTreeChild
has_content : vg::BitStringTree< Item >::TreeNode
has_grandparent_handle : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
has_parent_handle : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
has_position : vg::algorithms::GFAFormatError
has_reachability_edges : vg::MultipathAlignmentGraph
has_supports : vg::RepresentativeTraversalFinder
HASH_TABLE_MAX_WIDTH : vg::MinimizerIndexParameters
HASH_TABLE_MIN_WIDTH : vg::MinimizerIndexParameters
hash_table_width : vg::MinimizerIndexParameters
hasher : vg::GAFSorterRecord
head_tail_nodes : vg::Paths
header : vg::Haplotypes
header_lines : vg::GAFSorterFile
header_listeners : vg::algorithms::GFAParser
header_mutex : vg::HTSWriter
heading : vg::subcommand::OptionGroup< Receiver >
help : vg::subcommand::BaseArgSpec< Receiver >
here : vg::Range< Number >
HET_ADJUSTMENT : vg::Recombinator
het_adjustment : vg::Recombinator::Parameters
het_prior_logprob : vg::Genotyper
heterozygous_prior_ln : vg::FixedGenotypePriorCalculator
high_coverage_chains : vg::Recombinator::Parameters
high_coverage_contigs : HaplotypesConfig
high_coverage_num_haplotypes : vg::Recombinator::Parameters
hint_paths : vg::CactusSnarlFinder
hit_cap : vg::MinimizerMapper
hit_max : vg::BaseMapper
homozygous_prior_ln : vg::FixedGenotypePriorCalculator
hts_mode : vg::HTSWriter
HTSLIB_CRAM_THREADS : vg::HTSWriter
HTSLIB_HEADERS : vg::Version
HTSLIB_LIBRARY : vg::Version